Why Do We Feel Thirst? An Interview with Yuki Oka

Credit: Lance Hayashida/Caltech Marketing and Communications

To fight dehydration on a hot summer day, you instinctively crave the relief provided by a tall glass of water. But how does your brain sense the need for water, generate the sensation of thirst, and then ultimately turn that signal into a behavioral trigger that leads you to drink water? That's what Yuki Oka, a new assistant professor of biology at Caltech, wants to find out.

Oka's research focuses on the study of how the brain and body work together to maintain a healthy ratio of salt to water as part of a delicate form of biological balance called homeostasis.

Recently, Oka came to Caltech from Columbia University. We spoke with him about his work, his interests outside of the lab, and why he's excited to be joining the faculty at Caltech.

Can you tell us a bit more about your research?

The goal of my research is to understand the mechanisms by which the brain and body cooperate to maintain our internal environment's stability, which is called homeostasis. I'm especially focusing on fluid homeostasis, the fundamental mechanism that regulates the balance of water and salt. When water or salt are depleted in the body, the brain generates a signal that causes either a thirst or a salt craving. And that craving then drives animals to either drink water or eat something salty.

I'd like to know how our brain generates such a specific motivation simply by sensing internal state, and then how that motivation—which is really just neural activity in the brain—goes on to control the behavior.

Why did you choose to study thirst?

After finishing my Ph.D. in Japan, I came to Columbia University where I worked on salt sensing mechanisms in the mammalian taste system. We found that the peripheral taste system has a key function for salt homeostasis in the body by regulating our salt intake behavior. But of course, the peripheral sensor does not work by itself.  It requires a controller, the brain, which uses information from the sensor. So I decided to move on to explore the function of the brain; the real driver of our behaviors.

I was fascinated by thirst because the behavior it generates is very robust and stereotyped across various species. If an animal feels thirst, the behavioral output is simply to drink water. On the other hand, if the brain triggers salt appetite, then the animal specifically looks for salt—nothing else. These direct causal relations make it an ideal system to study the link between the neural circuit and the behavior.

You recently published a paper on this work in the journal Nature. Could you tell us about those findings?

In the paper, we linked specific neural populations in the brain to water drinking behavior. Previous work from other labs suggested that thirst may stem from a part of the brain called the hypothalamus, so we wanted to identify which groups of neurons in the hypothalamus control thirst. Using a technique called optogenetics that can manipulate neural activities with light, we found two distinct populations of neurons that control thirst in two opposite directions. When we activated one of those two populations, it evoked an intense drinking behavior even in fully water-satiated animals. In contrast, activation of a second population drastically suppressed drinking, even in highly water-deprived thirsty animals.  In other words, we could artificially create or erase the desire for drinking water.

Our findings suggest that there is an innate brain circuit that can turn an animal's water-drinking behavior on and off, and that this circuit likely functions as a center for thirst control in the mammalian brain. This work was performed with support from Howard Hughes Medical Institute and National Institutes of Health [for Charles S. Zuker at Columbia University, Oka's former advisor].

You use a mouse model to study thirst, but does this work have applications for humans?

There are many fluid homeostasis-associated conditions; one example is dehydration. We cannot specifically say a direct application for humans since our studies are focused on basic research. But if the same mechanisms and circuits exist in mice and humans, our studies will provide important insights into human physiologies and conditions.

Where did you grow up—and what started your initial interest in science?

I grew up in Japan, close to Tokyo, but not really in the center of the city. It was a nice combination between the big city and nature. There was a big park close to my house and when I was a child, I went there every day and observed plants and animals. That's pretty much how I spent my childhood. My parents are not scientists—neither of them, actually. It was just my innate interest in nature that made me want to be a scientist.

What drew you to Caltech?

I'm really excited about the environment here and the great climate. That's actually not trivial; I think the climate really does affect the people. For example, if you compare Southern California to New York, it's just a totally different character. I came here for a visit last January, and although it was my first time at Caltech I kind of felt a bond. I hadn't even received an offer yet, but I just intuitively thought, "This is probably the place for me."

I'm also looking forward to talking to my colleagues here who use fMRI for human behavioral research. One great advantage about using human subjects in behavioral studies is that they can report back to you about how they feel. There are certainly advantages of using an animal model, like mice. But they cannot report back. We just observe their behavior and say, "They are drinking water, so they must be thirsty." But that is totally different than someone telling you, "I feel thirsty." I believe that combining advantages of animal and human studies should allow us to address important questions about brain functions.

Do you have any hobbies?

I play basketball in my spare time, but my major hobby is collecting fossils. I have some trilobites and, actually, I have a complete set of bones from a type of herbivorous dinosaur. It is being shipped from New York right now and I may put it in my new office.

Written by Jessica Stoller-Conrad


Source: California Institute of Technology

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Intensity of hurricanes: New study helps improve predictions of storm intensity

Rough sea with big waves (stock image). "The air-water interface -- whether it had significant waves or significant spray -- is a big factor in storm intensity," said Alex Soloviev, Ph.D., a professor at Nova Southeastern University's Oceanographic Center. "Hurricanes gain heat energy through the interface and they lose mechanical energy at the interface." Credit: © mimadeo / Fotolia

They are something we take very seriously in Florida -- hurricanes. The names roll off the tongue like a list of villains -- Andrew, Charlie, Frances and Wilma.

In the past 25 years or so, experts have gradually been improving prediction of the course a storm may take. This is thanks to tremendous advancements in computer and satellite technology. While we still have the "cone of uncertainty" we've become familiar with watching television weather reports, today's models are more accurate than they used to be.

The one area, however, where there is still much more to be researched and learned is in predicting just how intense a storm may be. While hurricane hunter aircraft can help determine wind speed, velocity, water temperature and other data, the fact is we often don't know why or how a storm gets stronger or weaker. There has been virtually no progress in hurricane intensity forecasting during the last quarter century.

But, thanks to new research being conducted, all that's about to change.

"The air-water interface -- whether it had significant waves or significant spray -- is a big factor in storm intensity," said Alex Soloviev, Ph.D., a professor at Nova Southeastern University's Oceanographic Center. "Hurricanes gain heat energy through the interface and they lose mechanical energy at the interface."

Soloviev is also an Adjunct Professor at the University of Miami Rosenstiel School of Marine and Atmospheric Science (UM RSMAS) and a Fellow at the Cooperative Institute for Marine and Atmospheric Studies (CIMAS.) He and his fellow researchers used a computational fluid dynamics model to simulate microstructure of the air-sea interface under hurricane force winds. In order to verify these computer-generated results, the group conducted experiments at the UM's Rosenstiel School Air-Sea Interaction Salt Water Tank (ASIST) where they simulated wind speed and ocean surface conditions found during hurricanes.

The study "The Air-Sea Interface and Surface Stress Under Tropical Cyclones" was published in the June 16, 2014 issue of the journal Nature Scientific Reports. Soloviev was the lead author of this study, which was conducted by a multi-institutional team including Roger Lukas (University of Hawaii), Mark Donelan and Brian Haus (UM RSMAS), and Isaac Ginis (University of Rhode Island.)

The researchers were surprised at what they found. Under hurricane force wind, the air-water interface was producing projectiles fragmenting into sub millimeter scale water droplets. This process is known from some engineering applications, including rocket science, as the Kelvin-Helmholtz (KH) instability. This new study then looked at how changes in microphysics of the air-sea interface can make a storm grow or weaken in intensity. With wind speed exceeding a Category 1 threshold, the ocean surface unexpectedly became more "slippery."

When the wind exceeded Category 3 hurricane force, the "slippery" effect started gradually disappearing and was completely gone at Category 5. The conclusion was that some hurricanes might rapidly intensify to Category 3 and then stay in a "comfortable" zone around Category 3 status. This finding is consistent with the global best-track tropical cyclone statistics on maximum intensity for 1982-2009. So far, these early results showed that physical conditions where the air and the ocean interact must be a vital part of any successful hurricane forecasting model and would help explain, and predict, how a storm might intensify as it moves through across the water based on the physical stress at the ocean's surface.

This work has been supported by the NOPP project "Advanced coupled atmosphere-wave-ocean modeling for improving tropical cyclone prediction models" (PIs: Isaac Ginis, URI and Shuyi Chen, UM) and by the Gulf of Mexico Research Initiative (GoMRI) Consortium for Advanced Research on the Transport of Hydrocarbons in the Environment -- CARTHE (PI: Tamay Özgökmen, UM). GoMRI is a 10-year, $500 million independent research program established by an agreement between BP and the Gulf of Mexico Alliance.

The plan is for the team to continue their research and experiments at UM's Alfred C. 

Glassell, Jr. SUSTAIN facility, which has recently been designed by one of the Nature article co-authors, Brian Haus (UM). It's the unique lab facility where they can recreate the conditions found in a Category 5 storm.

"We've got more work to do, but this is a great first step," Soloviev said. "But remember, no matter how good we get in predicting a storm's intensity, people in the path need to prepare accordingly regardless of what Category it is -- that's most important."

Source: Nova Southeastern University

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Protect the world's deltas, experts urge

The Atchafalaya River delta meets the Gulf of Mexico. The view is upriver to the northwest. Credit: Photo courtesy A. Belala/U.S. Army Corps of Engineers

Extensive areas of the world's deltas -- which accommodate major cities such as Shanghai, Dhaka and Bangkok -- will be drowned in the next century by rising sea levels, according to a Comment piece in this week's Nature. In the article, Dr. Liviu Giosan, a geologist with the Woods Hole Oceanographic Institution (WHOI), and colleagues call for maintenance efforts to be started now to avert the loss of vast expanses of coastline, and the consequent losses of ecological services, economic and social crises, and large-scale migrations.

The authors state the problems start upstream: deltas are built from sediments deposited at the mouths of rivers, but dams and river engineering have lowered rates of sediment flow. The Nile and the Indus, for example, carry 98 percent and 94 percent less mud respectively than they did 100 years ago. At the coast, rising seas resulting from warmer global temperatures are eroding delta plains, increasing the chance of flooding. Coastal lands lower than a meter in elevation will be inundated within a century.

Lack of quantitative knowledge of basic delta processes is hindering efforts to develop maintenance strategies for deltas, the authors say. At the same time, the role of healthy marshes in coastal processes needs to be more fully understood. Giosan and colleagues call for river sediment flows to be restored, and natural land-building methods to be exploited in delta plains under worldwide monitoring programs coordinated and guided by United Nations committee of experts.

Source: Woods Hole Oceanographic Institution

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This image shows a panda eating in China's Wolong Nature Reserve. Pandas habitat choices center around the ready availability of bamboo -- lots of bamboo. Credit: Sue Nichols, Michigan State University

Walter Dodds, university distinguished professor of biology (pictured), and Allison Veach, doctoral student in biology, are researching grassland streams and the expansion of nearby woody vegetation. They have studied 25 years of data on the Konza Prairie Biological Station and found that increasing fire frequency reduces the rate of woody vegetation expansion. Credit: Image courtesy of Kansas State University

Two Kansas State University biologists are studying streams to prevent tallgrass prairies from turning into shrublands and forests.

By looking at 25 years of data on the Konza Prairie Biological Station, Allison Veach, doctoral student in biology, Muncie, Indiana, and Walter Dodds, university distinguished professor of biology, are researching grassland streams and the expansion of nearby woody vegetation, such as trees and shrubs. They have found that burn intervals may predict the rate of woody vegetation expansion along streams.

Their latest research appears in the peer-reviewed journal PLOS ONE in an article "Fire and Grazing Influences on Rates of Riparian Woody Plant Expansion along Grassland Streams."

Grasslands in North America and across the globe are rapidly disappearing, Veach said, and woody plants are expanding and converting grasslands into forest ecosystems. This change in environment can affect stream hydrology and biogeochemistry, said Dodds, who has studied streams and watersheds on the Konza prairie for more than 20 years.

"This is an important issue regionally, because as trees expand into these grassland areas, people who are using grassland for cattle production have less grass for animals, too," Dodds said.

In their latest research, the biologists studied 25 years of aerial photography on Konza and observed the expansion of trees and shrubs in riparian areas, which include areas within 30 meters of streambeds. The researchers focused on three factors that affect grassland streams: burn intervals; grazers, such as bison; and the historical presence of woody vegetation.

Their analysis revealed an important finding: Burn intervals predicted the rate of woody vegetation expansion. Burning every one to two years slowed the growth of trees and shrubs, Veach said.

"Although we can reduce woody expansion by burning more frequently, we can't prevent it from occurring over time," Veach said. "Woody plant encroachment may not be prevented by fire alone."

The research shows the importance of burning to maintain the tallgrass prairie, Dodds said. While burning can help to slow the expansion of trees and shrubs, additional actions are need to maintain quickly disappearing grassland ecosystems.

"It's clear from this research that if you don't burn at all, these grassland streams basically are going to switch to forests and will not be grassland streams anymore," Dodds said.

Dodds and Veach also found that bison do not significantly affect woody vegetation expansion along streams. Previous Konza research has shown that bison do not spend significant time near stream areas, so they may not influence the growth of nearby trees and shrubs, Veach said.

Woody vegetation also may be expanding in grasslands because of more carbon dioxide in the atmosphere, Dodds said. Grasses and trees compete for carbon dioxide, and grasses are much better at conserving water and efficiently using carbon dioxide. As atmospheric carbon dioxide levels increase, it becomes easier for trees to gather carbon dioxide and gives them a growing advantage over grasses.

"The tallgrass prairie is almost nonexistent on the globe," Veach said. "In order for us to preserve tallgrass prairie, we need to look at woody encroachment because it has been an issue. Things like no fire or differences in climate change may allow woody plant species to competitively take over grasslands."

The biologists plan to continue studying water quality and quantity issues at Konza. Konza is an 8,600-acre tallgrass prairie ecological research site jointly owned by the university and The Nature Conservancy.

Source:  Kansas State University

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Logging destabilizes forest soil carbon over time

Chelsea Petrenko, a doctoral candidate at Dartmouth College, is lead author of a study showing that logging triggers the gradual release of the carbon stored in a forest's mineral soils. Credit: Dartmouth College

Logging doesn't immediately jettison carbon stored in a forest's mineral soils into the atmosphere but triggers a gradual release that may contribute to climate change over decades, a Dartmouth College study finds.

The results are the first evidence of a regional trend of lower carbon pools in soils of harvested hardwood forests compared to mature or pristine hardwood forests. The findings appear in the journal Global Change Biology Bioenergy. A PDF of the study is available on request.

Despite scientists' growing appreciation for soil's role in the global carbon cycle, mineral soil carbon pools are largely understudied and previous studies have produced differing results about logging's impact. For example, the U.S. Forest Service assumes that all soil carbon pools do not change after timber harvesting.

The Dartmouth researchers looked at how timber harvesting affects mineral soil carbon over 100 years following harvest in the northeastern United States, where soils account for at least 50 percent of total ecosystem carbon storage. Mineral soils, which underlie the carbon-rich organic layer of the soil, make up the majority of that storage, but are sometimes not included in carbon studies due to the difficulty in collecting samples from the rocky, difficult terrain. The researchers hypothesized that the mineral soil carbon would be lower in forests that had been harvested in the last century than in forests that were more than 100 years old. They collected mineral soil cores from 20 forests in seven areas across the northeastern United States and compared the relative amounts of carbon in the soil from forests that were logged five years ago, 25 years ago, 50 years ago, 75 years ago and 100 years ago.

The results showed no significant differences between mineral soil carbon in the older versus harvested forests. But there was a significant relationship between the time since forest harvest and the size of the carbon pools, which suggested a gradual decline in carbon across the region that may last for decades after harvesting and result in increased atmospheric carbon dioxide.

"Our study suggests that forest harvest does cause biogeochemical changes in mineral soil, but that a small change in a carbon pool may be difficult to detect when comparing large, variable carbon pools," says lead author Chelsea Petrenko) (formerly Vario), a doctoral candidate in the Graduate Program in Ecology and Evolutionary Biology and a trainee in Dartmouth's IGERT program for Polar Environmental Change. "Our results are consistent with previous studies that found that soil carbon pools have a gradual and slow response to \disturbance, which may last for several decades following harvest."

A previous Dartmouth study found that clear-cutting releases detectible amounts of carbon stored in deep forest soils, challenging the notion that burning woody biomass for energy is more carbon-neutral than fossil fuels. "Mineral soil, which is the most significant ecosystem carbon pool in temperate forests, should be studied more closely before the carbon neutrality of bioenergy from local wood in temperate forests is asserted," says Petrenko, whose research focuses on the biogeochemistry of warming ecosystems and the impact on climate change.

Source:  Dartmouth College

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Glimpsing pathway of sunlight to electricity

Andrew H. Marcus and Mark C. Lonergan stand by UO spectroscopy equipment. Credit: Image courtesy of University of Oregon

Four pulses of laser light on nanoparticle photocells in a University of Oregon spectroscopy experiment has opened a window on how captured sunlight can be converted into electricity.

The work, which potentially could inspire devices with improved efficiency in solar energy conversion, was performed on photocells that used lead-sulfide quantum dots as photoactive semiconductor material. The research is detailed in a paper placed online by the journal Nature Communications.

In the process studied, each single photon, or particle of sunlight, that is absorbed potentially creates multiple packets of energy called excitons. These packets can subsequently generate multiple free electrons that generate electricity in a process known as multiple exciton generation (MEG). In most solar cells, each absorbed photon creates just one potential free electron.

Multiple exciton generation is of interests because it can lead to solar cells that generate more electrical current and make them more efficient. The UO work shines new light on the little understood process of MEG in nanomaterials.

While the potential importance of MEG in solar energy conversion is under debate by scientists, the UO spectroscopy experiment -- adapted in a collaboration with scientists at Sweden's Lund University -- should be useful for studying many other processes in photovoltaic nanomaterials, said Andrew H. Marcus, professor of physical chemistry and head of the UO Department of Chemistry and Biochemistry.

Spectroscopic experiments previously designed by Marcus to perform two-dimensional fluorescence spectroscopy of biological molecules were adapted to also measure photocurrent. "Spectroscopy is all about light and molecules and what they do together," Marcus said. "It is a really great probe that helps to tell us about the reaction pathway that connects the beginning of a chemical or physical process to its end.

"The approach is similar to looking at how molecules come together in DNA, but instead we looked at interactions within semiconductor materials," said Marcus, an affiliate in UO's Institute of Molecular Biology, Materials Science Institute and Oregon Center for Optics. "Our method made it possible to look at electronic pathways involved in creating multiple excitons. The existence of this phenomenon had only been inferred through indirect evidence. We believe we have seen the initial steps that lead to MEG-mediated photo conductivity."

The controlled sequencing of laser pulses allowed the seven-member research team to see -- in femtoseconds (a femtosecond is one millionth of one billionth of a second) -- the arrival of light, its interaction with resting electrons and the subsequent conversion into multiple excitons. The combined use of photocurrent and fluorescence two-dimensional spectroscopy, Marcus said, provided complementary information about the reaction pathway.

UO co-author Mark C. Lonergan, professor of physical and materials chemistry, who studies electrical and electrochemical phenomena in solid-state systems, likened the processes being observed to people moving through a corn maze that has one entrance and three exits.
People entering the maze are photons. Those who exit quickly represent absorbed photons that generate unusable heat. People leaving the second exit represent other absorbed photons that generate fluorescence but not usable free electrons. People leaving the final exit signify usable electrical current.

"The question we are interested in is exactly what does the maze look like," Lonergan said. "The problem is we don't have good techniques to look inside the maze to discover the possible pathways through it. The techniques that Andy has developed basically allow us to see into the maze by encoding what is coming out of the system in terms of exactly what is going in. We can visualize what is going on, whether two people coming into the maze shook hands at some point and details about the pathway that led them to come out the electricity exit."

The project began when Tonu Pullerits, who studies ultrafast photochemistry in semiconductor molecular materials at Lund University, approached Marcus about adopting his spectroscopic system to look at solar materials. Khadga J. Karki, a postdoctoral researcher in Pullerits' lab, then visited the UO and teamed with the Marcus and Lonergan groups to reconfigure the equipment.

UO doctoral student Julia R. Widom was a co-leading author on the paper. Other co-authors with Pullerits, Marcus and Lonergan were Joachim Seibt of Lund University and UO graduate student Ian Moody.

Source:  University of Oregon

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Impact of climate change on the soil ecosystem

The Basque Institute for Agricultural Research and Development NEIKER-Tecnalia has had a Microbial Observatory in the Ordesa and Monte Perdido National Nature Reserve (Huesca Pyrenees) since 2011. Its purpose is to evaluate the impact of climate change on the ecosystems of the soil by monitoring its microbial properties over time. Credit: Image courtesy of Basque Research

The Basque Institute for Agricultural Research and Development NEIKER-Tecnalia has had a Microbial Observatory in the Ordesa and Monte Perdido National Nature Reserve (Huesca Pyrenees) since 2011. Its purpose is to evaluate the impact of climate change on the ecosystems of the soil by monitoring its microbial properties over time. The research areas are located at altitudes of between 1,500 and 2,600 metres, which provides a broad range of different climate conditions and makes it possible to observe how the altitude affects the properties of the soil and the micro-organisms living in it. Preliminary results indicate that microbial properties are highly dependent on the physical and chemical properties of the soil on a small scale and on the environmental conditions existing at the moment when the samples are gathered.

To conduct this research, NEIKER-Tecnalia is using the most advanced techniques in the matter of molecular biology, which have revolutionised microbial ecology. Specifically, massive sequencing analyses are being carried out right now; they allow a large number of genes to be sequenced and identified within a short space of time. The genetic sequencing of the subterranean biosphere is seeking to gain a better understanding of the structure and function of the microbial communities across the altitude gradient.

NEIKER-Tecnalia's Microbial Observatory will contribute towards improving the current understanding of the effects of climate change on soil microbial communities and associated ecological processes. The alpine area where it is located is particularly suitable for a climate change observatory. Firstly, it is a remote spot relatively isolated from direct anthropogenic impacts, which means that global effects like climate change can be clearly perceived without the interference of more local environmental factors. Secondly, the altitude gradients that exist in the mountains in turn create clearly marked climate gradients within short distances; in other words, different climate conditions can be found at different altitudes.

Micro-organisms adapt more quickly than plants and macro-organisms

Micro-organisms adapt more quickly to changes than plants or other macro-organisms, which means they are ideal bioindicators of the impact of sources of environmental stress on the functioning of ecosystems. It is very important to have a record of the alterations gradually occurring in the soil ecosystem as a result of climate change to be able to more accurately predict what future scenarios are going to be in store. It is important to stress that the soil is our most important resource; it is the basis of the terrestrial ecosystem and 95% of our food comes directly or indirectly from it.

The role of micro-organisms in relation to the functioning of the soil ecosystem is fundamental. The soil, which has been traditionally regarded as an inanimate item made up of minerals and chemical substances, contains a myriad of micro-organisms that are responsible for many of its vital functions and, consequently, its health. These functions include the decomposition and recycling of nutrients from dead plant and animal tissue, nitrogen fixing, the maintaining of soil structure and the elimination of contaminants.
It can be predicted that, in the long term, climate change will cause the biota of mountain soil to migrate towards higher altitudes in the quest for the optimum bioclimatic environment. The problem is that this migration has a limit, which is the summit of the mountain, beyond which no migration or escape is possible.

Source:  Basque Research

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Desert streams: Deceptively simple

Dryland channels exhibit very simple topography despite being shaped by volatile rainstorms. Credit: Katerina Michaelides

Volatile rainstorms drive complex landscape changes in deserts, particularly in dryland channels, which are shaped by flash flooding. Paradoxically, such desert streams have surprisingly simple topography with smooth, straight and symmetrical form that until now has defied explanation.

That paradox has been resolved in newly published research conducted by Michael Singer and Katerina Michaelides, associate researchers at UC Santa Barbara's Earth Research Institute. The pair show that simple topography in dryland channels is maintained by complex interactions among rainstorms, the stream flows these storms generate in the river channel and sediment grains present on the riverbed. Their findings appear in the journal Geology.

Desert streams flow only during infrequent but intense rainstorms, and when they do, only parts of the channel contain water, making the flow irregular and erratic. One rainstorm may erode sediment grains in one section of the channel, while another storm moves sediment in a different area.

"Given this localized sediment movement during rainstorms, one might expect desert channels to contain mounds of sediment that undulate down the stream course reflecting the irregular flow, but they don't," Singer said. "The water produced in the channel only flows partially down the stream and then stops because it seeps into the riverbed, and there's not enough water from upstream to replace it, so it just disappears."

Because desert river channels do not feature the river bars, pools or riffles common in perennial streams, they decline in elevation downstream very smoothly. According to the researchers' findings, feedback between two variables -- complex water and sediment movements -- shape such basins.

Singer and Michaelides used data collected from the Rambla de Nogalte in southeastern Spain to model these dryland channel variables. The area has a semi-arid climate with mean annual rainfall of around 14 inches, which occurs during convective rainstorms, producing large floods that recur about once a decade.

They found that dryland channel width fluctuates downstream. Their observations show that grain size (roughness) also fluctuates from sand to gravel a downstream direction.

"There's feedback between this fluctuating width and fluctuating grain size," Singer said. "The stream flow is generated in a discontinuous pattern along the channel. Some rainstorms produce a bit of topography in some parts of the channel. Other spatial configurations of flow generated by storms destroy that topography so the variability of the rainstorms interacting with this channel are creating and destroying the topography constantly to keep it in this simple form."

Singer and Michaelides also produced simulations of extreme flows to determine the volume of flow necessary to reshape the channel completely. They examined the longitudinal variability of sediment flow as well as sediment storage to find the channel-shaping threshold. This threshold reshapes the entire channel and makes it smooth again. "It's a really significant threshold that tells us the magnitude of the flood necessary to reshape the channel," Singer said.

"Semi-arid and arid river systems are extremely important to the populations that live around them," he concluded. "Water resources are obviously a huge limitation in the development of societies, and a lot of water is being progressively diverted for irrigation, water use and other purposes, so those can further affect the spatial patterns of where flow is in these channels and potentially impact the processes of where topography develops in the river channel. Humans can inadvertently have an impact on the shape and form of river channels like these."

Source:  University of California - Santa Barbara

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Seeing the forest for the trees: Youngest trees in a forest tell the biggest story

LSU ecologist Kyle Harms co-authors first study to quantify the process of diversification in forests and likely all other sessile ecosystems. Credit: Louisiana State University

The largest trees in a forest may command the most attention, but the smallest seedlings and youngest saplings are the ones that are most critical to the composition and diversity of the forest overall. While many people gaze up into the forest canopy, scientist Joseph Connell has spent much of his career looking down quite closely at the forest understory. Connell, who is a professor emeritus in the Department of Ecology, Evolution and Marine Biology at the University of California at Santa Barbara, established one of the world's longest, in-depth ecological research studies on the planet. The Connell Plots Rainforest Network has thus far produced a 50-year collection of data on individual trees in Australia's protected rainforests.

"Having such a long-term, detailed dataset is highly unusual. It's the kind of temporal depth we need to answer some of the big questions such as, what are the ecological processes that maintain diversity?" said Kyle Harms, professor in the LSU Department of Biological Sciences and a collaborator with Connell.

Early in his career, Harms was a post-doctoral researcher in Connell's lab at U.C. Santa Barbara. There, he met former fellow post-doctoral researcher and current collaborator Peter Green, who is a senior lecturer at La Trobe University in Melbourne, Australia.

Harms and Green were inspired to use their mentor's dataset; therefore, they devised an analysis to test the long-standing hypothesis that the patterns of composition and diversity among a forest's mature trees are largely set by processes that occur in trees' earliest life stages. Harms ran statistical analyses on 7,977 individual trees across 186 species that were censused in one of Connell's tropical Australian forest plots from 1971-2013.

He repeatedly ran simulation analyses on six tiers of trees based on size in order to predict the expected outcome of diversity at each tier. Then he compared the expected levels of diversity in each tier with the true collected data.

"What we found was that the seedlings are more diverse than the statistical expectations predicted them to be, but the larger trees' levels of diversity were about the same as the predictions" he said.

These results are the first quantitative evidence that the earliest life cycle stages of individual trees are more critical than later stages to the overall relative abundances of mature trees in a forest. Their findings will be published online in the Proceedings of the National Academy of Sciences this week.

The stronger influence of ecological sorting processes operating at the earliest life cycle stages compared to later life stages, which they quantified, also likely occurs in other highly diverse ecosystems with rooted, or sessile, organisms including grasslands, herbaceous plant communities and marine communities of coral.

"I think this is something that is happening broadly in ecosystems across the planet," Harms said.

He and his collaborators' results underscore the importance of support for long-term, in-depth datasets, as well as the need to investigate the early life stages -- for example, the smallest, newly germinated seedlings -- where the most critical processes are occurring.

"I think it helps us understand where to focus in order to really understand the biased sorting processes that create the composition and diversity patterns in the forest overall," he said.

Source: Louisiana State University

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Fracking and pollution: Technology-dependent emissions of gas extraction in the US

The KIT measurement instrument on board of a minivan directly measures atmospheric emissions on site with a high temporal resolution.
Credit: Photo: F. Geiger/KIT

Not all boreholes are the same. Scientists of the Karlsruhe Institute of Technology (KIT) used mobile measurement equipment to analyze gaseous compounds emitted by the extraction of oil and natural gas in the USA. For the first time, organic pollutants emitted during a fracking process were measured at a high temporal resolution using a vapor capture system. The highest values measured by this process exceeded typical mean values in urban air by a factor of about one thousand, as was reported in the ACP journal.

Emission of trace gases by oil and gas fields was studied by the KIT researchers in the USA (Utah and Colorado) together with US institutes. Background concentrations and the waste gas plumes of single extraction plants and fracking facilities were analyzed. The air quality measurements of several weeks duration took place under the "Uintah Basin Winter Ozone Study" coordinated by the National Oceanic and Atmospheric Administration (NOAA).

The KIT measurements focused on health-damaging aromatic hydrocarbons in air, such as carcinogenic benzene. Maximum concentrations were determined in the waste gas plumes of boreholes. Some extraction plants emitted up to about a hundred times more benzene than others. The highest values of some milligrams of benzene per cubic meter air were measured downstream of an open fracking facility, where returning drilling fluid is stored in open tanks and basins. Much better results were reached by oil and gas extraction plants and plants with closed production processes. In Germany, benzene concentration at the workplace is subject to strict limits: The Federal Emission Control Ordinance gives an annual benzene limit of five micrograms per cubic meter for the protection of human health, which is smaller than the values now measured at the open fracking facility in the US by a factor of about one thousand. The researchers published the results measured in the journal Atmospheric Chemistry and Physics ACP.

"Characteristic emissions of trace gases are encountered everywhere. These are symptomatic of gas and gas extraction. But the values measured for different technologies differ considerably," Felix Geiger of the Institute of Meteorology and Climate Research (IMK) of KIT explains. He is one of the first authors of the study. By means of closed collection tanks and so-called vapor capture systems, for instance, the gases released during operation can be collected and reduced significantly.

"The gas fields in the sparsely populated areas of North America are a good showcase for estimating the range of impacts of different extraction and fracking technologies," explains Professor Johannes Orphal, Head of IMK. "In the densely populated Germany, framework conditions are much stricter and much more attention is paid to reducing and monitoring emissions."

Fracking is increasingly discussed as a technology to extract fossil resources from unconventional deposits. Hydraulic breaking of suitable shale stone layers opens up the fossil fuels stored there and makes them accessible for economically efficient use. For this purpose, boreholes are drilled into these rock formations. Then, they are subjected to high pressure using large amounts of water and auxiliary materials, such as sand, cement, and chemicals. The oil or gas can flow to the surface through the opened microstructures in the rock. Typically, the return flow of the aqueous fracking liquid with the dissolved oil and gas constituents to the surface lasts several days until the production phase proper of purer oil or natural gas. This return flow is collected and then reused until it finally has to be disposed of. Air pollution mainly depends on the treatment of this return flow at the extraction plant. In this respect, currently practiced fracking technologies differ considerably. For the first time now, the resulting local atmospheric emissions were studied at a high temporary resolution. Based on the results, emissions can be assigned directly to the different plant sections of an extraction plant. For measurement, the newly developed, compact, and highly sensitive instrument, a so-called proton transfer reaction mass spectrometer (PTR-MS), of KIT was installed on board of a minivan and driven closer to the different extraction points, the distances being a few tens of meters. In this way, the waste gas plumes of individual extraction sources and fracking processes were studied in detail.

Source: Karlsruhe Institute of Technology

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Groundwater patches play important role in forest health, water quality

This is Kevin McGuire, associate director of the Virginia Water Resources Research Center. Credit: Virginia Tech

Even during summer dry spells, some isolated patches of soil in forested watersheds remain waterlogged.

These patches act as hot spots of microbial activity that remove nitrogen from groundwater and return it to the atmosphere, researchers from several institutions, including Virginia Tech, report in a leading scientific journal.

The discovery provides insight into the health of a forest. Nitrogen is an important nutrient for plant growth and productivity, but in streams, it can be a pollutant.

"The importance of these fragmented patches of saturated soil and their role in the fate of nitrogen in forested watersheds has been underappreciated until recently," said Kevin McGuire, an associate director of the Virginia Water Resources Research Center based in Virginia Tech's College of Natural Resources and Environment, co-author of the article to be published in the Proceedings of the National Academy of Sciences.

"We were able to determine the importance of denitrification in patches of shallow groundwater, which have largely been overlooked control points for nitrogen loss from temperate forested watersheds," McGuire said.

Most nitrogen is deposited by rain. Temperate forests receive much larger inputs of nitrogen from the atmosphere than they export to streams. Once nitrogen leaves the forest in streams, it can become a water pollutant.

"In some ecosystems, there have been long-term declines in stream water export of nitrogen when inputs have remained elevated," said co-author Christine Goodale, an associate professor of ecology and evolutionary biology at Cornell University.

"Understanding the fate of this nitrogen has been a challenge because denitrification -- a gaseous loss of nitrogen to the atmosphere -- is notoriously difficult to measure," said co-author Peter Groffman, an expert on denitrification at the Cary Institute of Ecosystem Studies.

Denitrification removes nitrogen from water and can therefore improve water quality in downstream lakes and estuaries.

However, nitrogen is also an important nutrient for plant growth in the forest so removals of nitrogen by natural processes can reduce the productivity of the forest.
The research, led by Sarah Wexler while she was a postdoctoral associate in hydrology and stable isotope geochemistry at Cornell University, took place in the Hubbard Brook Experimental Forest in the White Mountains of New Hampshire, where the atmosphere annually deposits five to seven pounds of nitrogen per acre.

The Hubbard Brook Experimental Forest is part of the National Science Foundation's Long Term Ecological Research Network.

McGuire, also an associate professor of hydrology in the Department of Forest Resources and Environmental Conservation, led another National Science Foundation-funded project at the site, which developed an organizing framework to describe and map variations of soil in the watershed that explain shallow groundwater occurrence and frequency.
Groundwater wells from this earlier study were used in the new research to monitor soils that may have had the right conditions to function as hot spots for denitrification.

At sites throughout the forest, the research team measured the presence of nitrate, a form of nitrogen that is highly mobile and reactive in the environment, determined whether the nitrate is a result of atmospheric deposition or microbial conversion, and discovered the nitrogen loss to the atmosphere.

"We were able to differentiate sources of nitrate and show that some of the nitrate was lost to the atmosphere by looking at nitrate at the atomic level, that is, at the isotopic composition of the nitrogen and oxygen in nitrate," said Wexler, who is now at the School of Environmental Sciences at the University of East Anglia in the United Kingdom. "The isotopic composition of nitrate provides a natural way to directly track the details of nitrogen cycling."

McGurie said, "Some work remains to be done, but the aim is to be able to develop a better sense of where and how nitrogen is processed in the environment and be in a position to predict how changes in climate, for example warmer and wetter conditions, affect nitrogen cycling and water quality in forested ecosystems."

Source: Virginia Tech

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'Aquatic osteoporosis' jellifying lakes

A handful of Holopedium capsules which are replacing the water flea Daphnia due to declining calcium levels in many lakes.
Credit: Image courtesy of Queen's University

A plague of "aquatic osteoporosis" is spreading throughout many North American soft-water lakes due to declining calcium levels in the water and hindering the survival of some organisms, says new research from Queen's University.

Researchers from Queen's, working with colleagues from York University and the University of Cambridge, as well as other collaborators, have identified a biological shift in many temperate, soft-water lakes in response to declining calcium levels after prolonged periods of acid rain and timber harvesting. The reduced calcium availability is hindering the survival of aquatic organisms with high calcium requirements and promoting the growth of nutrient-poor, jelly-clad animals.

In the study, researchers looked at the microscopic organisms (~1 mm) Daphnia and Holopedium -- the latter whose size is greatly increased by its jelly capsule.

"Calcium is an essential nutrient for many lake-dwelling organisms, but concentrations have fallen so low in many lakes that keystone species can no longer survive," says Adam Jeziorski, one of the lead authors of the study and a postdoctoral fellow in the Department of Biology at Queen's.

The research team found that when calcium levels are low, the water flea Daphnia, which has high calcium requirements, becomes less abundant. Importantly, this keystone species is being replaced by its jelly-clad competitor, Holopedium.

"Conditions now favour animals better adapted to lower calcium levels, and these changes can have significant ecological and environmental repercussions," says Dr. Jeziorski.

Tiny fossils from lake sediments were studied to determine the pre-impact conditions of the lakes as the calcium decline began before monitoring programs were in place. Using this technique, the team was able to examine the environmental trends from the past approximately 150 years.

"Lake sediments act like a history book of past changes in a lake, recording what happened before the problem was identified," says John Smol (Biology), Canada Research Chair in Environmental Change. "Jelly-clad invertebrates have been increasing in an alarming number of lakes. This is likely a long-term effect of acid rain on forest soils, logging and forest regrowth."

The increase in jelly-clad invertebrates can have important implications for lake biology, altering food webs, but can also clog water intakes.

"Many lakes we investigated have passed critical thresholds," says Dr. Smol. "We have been reduced to the role of spectator as these changes continue to unfold. Once again we see there are many unexpected consequences of our actions, most of which are negative."

This research was funded by the Natural Sciences and Engineering Research Council of Canada and the Ontario Ministry of the Environment and Climate Change.
The study is published in Proceedings of the Royal Society B.

Source: Queen's University

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Colorado River Delta greener after engineered pulse of water

Water being released from Morelos Dam in the first environmental release of water to the Colorado River Delta. The Minute 319 pulse flow of water started March 23, 2014 and ended May 18, 2014. Credit: Rebecca Lester, Deakin University, Australia

The engineered spring flood that brought water to previously dry reaches of the lower Colorado River and its delta resulted in greener vegetation, the germination of new vegetation along the river and a temporary rise in the water table, according to new results from the binational team of scientists studying the water's effects.

The experimental pulse flow of water was the result of a U.S.-Mexico agreement called Minute 319.

"The pulse flow worked," said Karl W. Flessa, co-chief scientist for the Minute 319 Science Team. "A small amount of water can have a big effect on the delta's ecosystem."Starting March 23, 2014, and ending May 18, approximately 105,392 acre-feet (130 million cubic meters) of water was released into the dry river bed below Morelos Dam, which straddles the U.S.-Mexico border just west of Yuma.

"The groundwater was recharged, vegetation got greener than previous years and the water helped germinate new native vegetation," said Flessa, a University of Arizona professor of geosciences. "As a bonus, the river reached the sea."

In addition, people living along the river benefited, he said.

"People in the communities along the river were just overjoyed to see their river again," he said. "When the surface water was there, people celebrated. Kids who'd never seen water in the river before got to splash in it."

The science team includes more than 21 scientists from universities, government agencies and nongovernmental organizations from both Mexico and the U.S, including the UA, the Universidad Autónoma de Baja California, the U.S. Geological Survey, the U.S. Bureau of Reclamation, The Nature Conservancy, the Tucson-based Sonoran Institute and the Ensenada-based Pronatura Noroeste.

Flessa will present the team's findings at his talk, "The Science and Policy of the First Environmental Flows to the Colorado River Delta," on Dec. 18 as part of the American Geophysical Union's annual meeting in San Francisco.

Although most of the water soaked into the ground in the 37 miles (60 km) below the dam, the river's surface flow reached areas farther downstream that had been targeted for restoration. The increase in groundwater revived vegetation along the entire 83-mile (134 km) route to the sea.

By comparing Landsat 8 satellite images from August 2013 with those from August 2014, team members calculated a 23 percent increase in the greenness of riparian zone vegetation.
Although the groundwater did eventually recede, the surface water caused the germination of new willows and cottonwoods. Those plants germinate after natural spring floods, and their roots can grow fast enough to keep up with the receding water table.

The surface water reached the restoration sites prepared by the Sonoran Institute and Pronatura Noroeste and helped establish native vegetation.

"So long as the roots get down into the permanent water table, then you have established a new bunch of trees that will then live for 20, 30, 40 years," Flessa said. "Those trees will attract birds."

The scientists already observed an increase in the numbers of birds, he said.
Learning where the newly germinated plants survived past the first summer will help the researchers figure out where ecosystem restoration will do the most good using the least amount of water, he said.

"The water that soaked into the ground is also good for the farmers," Flessa said. "It raises the water table and they pump that water -- so this isn't just about trees and birds."
The team will continue to monitor the lower Colorado River Delta's vegetation and hydrological response to the pulse flow, including the long-term effect on groundwater. They will also study how the new vegetation affects both resident birds and those migrating along the Pacific Flyway.

The five-year program to monitor the environmental results of the pulse flow is being supported by government agencies and environmental groups in both countries, under the auspices of the International Boundary and Water Commission.

The Minute 319 pulse flow is part of a five-year agreement (2012-17) adopted by the International Boundary and Water Commission, under the framework of a 1944 U.S. -- Mexico treaty that governs water allocations on the Colorado River between the two countries.

The agreement provides multiple benefits for Colorado River water users in both countries, including environmental flows to the delta. Minute 319 identifies criteria for sharing of future water shortages and surpluses between the two countries, allows storage of Mexican water in Lake Mead and supports improvements to Mexican irrigation infrastructure.
"Another pulse flow would require a new agreement, because Minute 319 calls for only one pulse flow within the five-year term of the minute," Flessa said. "We hope the results of this pulse flow encourage the negotiators to make this happen again."

Source: University of Arizona

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The Massive debris pile reveals risk of huge tsunamis in Hawaii

The researchers simulated earthquakes with magnitudes between 9.0 and 9.6 originating at different locations along the Aleutian-Alaska subduction zone, and found that the unique geometry of the eastern Aleutians would direct the largest post-earthquake tsunami energy directly toward the Hawaiian Islands. The red circles are centered on Kaua‘i and encircle the Big Island. Credit: Rhett Butler

A mass of marine debris discovered in a giant sinkhole in the Hawaiian islands provides evidence that at least one mammoth tsunami, larger than any in Hawaii's recorded history, has struck the islands, and that a similar disaster could happen again, new research finds. Scientists are reporting that a wall of water up to nine meters (30 feet) high surged onto Hawaiian shores about 500 years ago. A 9.0-magnitude earthquake off the coast of the Aleutian Islands triggered the mighty wave, which left behind up to nine shipping containers worth of ocean sediment in a sinkhole on the island of Kauai.

The tsunami was at least three times the size of a 1946 tsunami that was the most destructive in Hawaii's recent history, according to the new study that examined deposits believed to have come from the extreme event and used models to show how it might have occurred. Tsunamis of this magnitude are rare events. An earthquake in the eastern Aleutian Trench big enough to generate a massive tsunami like the one in the study is expected to occur once every thousand years, meaning that there is a 0.1 percent chance of it happening in any given year -- the same probability as the 2011 Tohoku earthquake that struck Japan, according to Gerard Fryer, a geophysicist at the Pacific Tsunami Warning Center in Ewa Beach, Hawaii.

Nevertheless, the new research has prompted Honolulu officials to revise their tsunami evacuation maps to account for the possibility of an extreme tsunami hitting the county of nearly 1 million people. The new maps would more than double the area of evacuation in some locations, according to Fryer.
"You're going to have great earthquakes on planet Earth, and you're going to have great tsunamis," said Rhett Butler, a geophysicist at the University of Hawaii at Manoa and lead author of the new study published online in Geophysical Research Letters, a journal of the American Geophysical Union. "People have to at least appreciate that the possibility is there."

Hawaiians have told stories about colossal tsunamis hitting the islands for generations, but possible evidence of these massive waves was only first detected in the late 1990s when David Burney, a paleoecologist at the National Tropical Botanical Garden in Kalaheo, was excavating the Makauwahi sinkhole, a collapsed limestone cave on the south shore of Kauai.

Two meters (six and a half feet) below the surface he encountered a layer of sediment marked by coral fragments, mollusk shells and coarse beach sand that could only have come from the sea. But the mouth of the sinkhole was separated from the shore by 100 meters (328 feet) of land and seven-meter (23-foot) high walls. Burney speculated that the deposit could have been left by a massive tsunami, but he was unable to verify the claim.

The deposits remained a mystery until the Tohoku earthquake hit Japan in 2011. It caused water to surge inland like a rapidly rising tide, reaching heights up to 39 meters (128 feet) above the normal sea level. After that tsunami deluged the island nation, scientists began to question Hawaii's current tsunami evacuation maps. The maps are based largely upon the 1946 tsunami, which followed a magnitude 8.6 earthquake in the Aleutian Islands and caused water to rise only two and a half meters (8 feet) up the side of the Makauwahi sinkhole.

"[The Japan earthquake] was bigger than almost any seismologist thought possible," said Butler. "Seeing [on live TV] the devastation it caused, I began to wonder, did we get it right in Hawaii? Are our evacuation zones the correct size?"

To find out, the study's authors used a wave model to predict how a tsunami would flood the Kauai coastline. They simulated earthquakes with magnitudes between 9.0 and 9.6 originating at different locations along the Aleutian-Alaska subduction zone, a 3,400-kilometer (2,113-mile) long ocean trench stretching along the southern coast of Alaska and the Aleutian Islands where the Pacific tectonic plate is slipping under the North American plate.

The researchers found that the unique geometry of the eastern Aleutians would direct the largest post-earthquake tsunami energy directly toward the Hawaiian Islands. Inundation models showed that an earthquake with a magnitude greater than 9.0 in just the right spot could produce water levels on the shore that reached eight to nine meters (26 to 30 feet) high, easily overtopping the Makauwahi sinkhole wall where the ocean deposits were found.

The authors used radiocarbon-dated marine deposits from Sedanka Island off the coast of Alaska and along the west coasts of Canada and the United States dating back to the same time period as the Makauwahi deposit to show that all three sediments could have come from the same tsunami and provide some evidence that the event occurred, according to the study.

"[The authors] stitched together geological evidence, anthropological information as well as geophysical modeling to put together this story that is tantalizing for a geologist but it's frightening for people in Hawaii," said Robert Witter, a geologist at the U.S. Geological Survey in Anchorage, Alaska who was not involved in the study.

According to Witter, it is possible that a massive tsunami hit Hawaii hundreds of years ago, based on the deposits found in the Kauai sinkhole, but he said it is difficult to determine if all three locations experienced the same event based on radiocarbon dating alone.

Radiocarbon dating only gives scientists a rough estimate of the age of a deposit, he said. All three locations offer evidence of a great tsunami occurring between 350 and 575 years ago, but it is hard to know if it was the same tsunami or ones that occurred hundreds of years apart.

"An important next thing to do is to look for evidence for tsunamis elsewhere in the Hawaiian island chain," said Witter.

Fryer, of the Pacific Tsunami Warning Center, is confident that more evidence of the massive tsunami will be found, confirming that events of this magnitude have rocked the island chain in the not-so-distant past.

"I've seen the deposit," said Fryer, who was not involved in the study. "I'm absolutely convinced it's a tsunami, and it had to be a monster tsunami."

Fryer is so convinced that he has worked with the city and county of Honolulu to update their tsunami evacuation maps to include the possibility of a massive tsunami the size of the one detailed in the new study hitting the islands. The county hopes to have the new maps distributed to residents by the end of the year, he said.

"We prepared ourselves for the worst tsunami that's likely to happen in one hundred years," Fryer said of the current tsunami evacuation maps based on the 1946 event. "What hit Japan was a thousand-year event … and this scenario [in the eastern Aleutians] is a thousand year event."

Source: American Geophysical Union

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