Heat waves becoming more prominent in urban areas, research reveals

Prolonged periods of extreme heat increased significantly between 1973 and 2012 in almost half of the urban areas the researchers analyzed. Credit: Ucla

The frequency of heat waves has increased dramatically over the past 40 years, and the trend appears to be growing faster in urban areas than in less-populated areas around the world, a new study suggests.

“Our findings suggest that urban areas are experiencing a kind of double whammy — a combination of general climatic warming combined with the heat island effect, wherein human activities and the built environment trap heat, preventing cities from cooling down as fast as rural areas,” said Dennis Lettenmaier, a co-author of the study and a UCLA geography professor. “Everything’s warming up, but the effect is amplified in urban areas.”

Lettenmaier and his co-authors studied 217 urban areas across the globe and found that prolonged periods of extreme heat increased significantly in 48 percent of them between 1973 and 2012.

The results, which were published today in the journal Environmental Research Letters, show that about only 2 percent of those urban areas experienced a significant decline in heat waves. And the change was more dramatic at night: Almost two-thirds of the urban areas showed significant increases in the frequency of extremely hot nights.

“The fact that the trend was so much stronger at night underscores the role of the heat island effect in urban areas,” Lettenmaier said. “You have heat being stored in buildings and in asphalt, concrete and other building materials, and they don’t cool down as quickly as they would outside of the urban area. This effect was likely exacerbated by decreasing wind in most of the urban areas.”

The study is one of the first to focus solely on the extent of extreme weather in urban areas globally and to examine disparities between densely populated and less-densely populated areas.

Lettenmaier collaborated with researchers at the Indian Institute of Technology Gandhinagar, Northeastern University and the University of Washington. The team obtained daily observations for rain, air temperature and wind speed from the National Oceanic and Atmospheric Administration. The researchers identified about 650 urban areas with populations greater than 250,000 and then refined the list to the 217 locales based on the areas’ proximity to weather stations with complete weather records and NOAA data — most were located at airports close to urban areas. Although the researchers would have liked to have more data for urban areas in Africa, Lettenmaier said the report provides as close as possible to a representative sample of changing weather conditions in the world’s cities. 

For each of the locales in the study, the researchers identified extremes for temperature, precipitation and wind, calculated heat and cold waves, and pinpointed individual extremely hot days and nights.

The study defined heat waves as periods in which the daily maximum temperature was hotter than 99 percent of days for the four-decade period and in which those temperatures were sustained for a consecutive period of six or more days. (The median length of heat waves was eight days.) It found that the average number of heat waves per year increased by over 50 percent during the period.

Of the five years with the largest number of heat waves, four were the most recent years for which data was available: 2009, 2010, 2011 and 2012. Urban areas in South America experienced the greatest increase in frequency of heat waves, followed in order by those in Africa, Europe, India and North America.

Researchers also found other striking examples of climate change within urban settings. Sixty percent experienced a significant decline in extreme windy days, 17 percent experienced a significant increase in daily precipitation extremes, and 10 percent experienced a significant increase in maximum annual precipitation.

“Urban areas make up a relatively small part of the global land area, but over half the world’s populations now live in them, so the trend is troublesome,” said lead author Vimal Mishra, an assistant professor of civil engineering at IIT Gandhinagar. “The combination of higher temperatures and lower wind in particular is not a good combination for human health and well-being. This should concern everyone.”

The increase in precipitation could damage cities’ infrastructure, which could also mean large economic losses, Mishra said.

Using a separate data set of 142 pairs of urban and non-urban areas, the researchers found that the frequency of heat waves grew 56 percent more quickly in urban settings than in surrounding areas that were less populated. Urban areas experienced 60 percent fewer extremely windy days than non-urban areas.

“In urban areas, buildings are disrupting the air flow, which affects not only the immediate area of buildings, but apparently the larger regional wind fields,” Lettenmaier said. “The reduction in wind may well be exacerbating the heat island effect.” 

Source: UCLA

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Study Yields Surprising Insights into Global Effects of Wood Fuel Burning

Courtesy of Adrian Ghilardi

The harvesting of wood to meet the heating and cooking demands for billions of people worldwide has less of an impact on global forest loss and carbon dioxide (CO2) emissions than previously believed, according to a new Yale-led study.

Writing in the journal Nature Climate Change, a team of researchers, including Prof. Robert Bailis of the Yale School of Forestry & Environmental Studies (F&ES), concludes that only about 27 to 34 percent of wood fuel harvested worldwide would be considered “unsustainable.” According to the assessment, “sustainability” is based on whether or not annual harvesting exceeds incremental re-growth.

The other authors are Rudi Drigo, an independent forestry specialist with international experience; and Adrian Ghilardi and Omar Masera of the National Autonomous University of Mexico.

According to the authors, the findings point to the need for more nuanced, local-specific policies that address forest loss, climate change, and public health. They also suggest that existing carbon offset methodologies used to reduce carbon emissions likely overstate the CO2 emission reductions that can be achieved through the promotion of more efficient cookstove technologies.

The study identifies a set of “hotspots” where the majority of wood extraction exceeds sustainable yields. These hotspot regions — located mainly in South Asia and East Africa — support about 275 million people who are reliant on wood fuel.

“If forests and woodlands would have been cut down anyway, then the projects designed to reduce wood fuel demand are not actually going to reduce deforestation.”— Robert Bailis

However, in other regions, the authors say, much of the wood used for this traditional heating and cooking is actually the byproduct of deforestation driven by other factors, such as demand for agricultural land, which would have occurred anyway.

“If forests and woodlands would have been cut down anyway, then the projects designed to reduce wood fuel demand are not actually going to reduce deforestation,” said Bailis, an associate professor at F&ES and lead author of the study. “Sure, you’re reducing wood use, but the underlying pressures driving deforestation are still out there.”

The results stand in contrast to a long-held assumption that the harvesting of wood fuels — which accounts for more than half of the wood harvested worldwide — is a major driver of deforestation and climate change.
  
Using a model originally developed by Drigo and Masera, and already applied in more than 20 countries, the researchers produce a spatially explicit snapshot of wood fuel supply and demand in 90 countries across the world’s tropical regions, where burning wood is a critical source of energy for cooking and heating.

“One of the problems with traditional bio-energy is that the situation is very locally specific, so you can’t come up with a general response for all places,” said Masera. “One of the real strengths of this paper is that it demonstrates a methodology that allows you to identify priority regions for intervention”

The study identified a set of “hotspot” regions in South Asia and Eastern Africa where the majority of wood extraction exceeds sustainable yields.

In addition to the global analysis, the researchers are using the same model to evaluate the sustainability of wood fuel resources in three case studies: Honduras, Kenya, and the Indian state of Karnataka.

“Even within a given country the situation varies a great deal,” said Drigo. “Some areas are over-exploited while others are under-exploited or totally untouched. A better understanding of the relationship between supply and demand requires this type of spatial approach to clarify what the impacts of different policies will be.”

Emissions from wood fuels account for about 1.9 to 2.3 percent of global emissions, the study says. The deployment of 100 million improved cookstoves could reduce this by 11 to 17 percent, said Bailis, who also studies the factors that influence the adoption of cleaner cookstoves in developing nations.

These reductions would be worth more than $1 billion per year in avoided greenhouse gas emissions if black carbon were integrated into carbon markets, he said.

“We need to be able to understand where these different components of non-renewability are coming from in order to get a better sense of the positive impacts of putting stoves into peoples' homes or promoting transitions to cooking with gas or electricity,” he said.

The research was funded by the Global Alliance for Clean Cookstoves, an initiative supported by the UN Foundation.

Source: Yale University

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Helping outdoor workers reduce skin cancer risk

QUT health promotion specialist Dr Marguerite Sendall is reducing skin cancer risk for outdoor workers. Credit: Image courtesy of Queensland University of Technology

Skin cancer is one of the biggest fears for one in two outdoor workers and when the boss and staff work together the sun safe message gets through, a QUT study has found.

The study, which found more than 50 per cent of outdoor workers rated UV radiation exposure at work as one of their biggest concerns, also identified how a workplace intervention could improve workers' behaviours and attitudes towards sun protection to reduce their risk of skin cancer.

QUT in collaboration with Cancer Council Queensland and Curtin University worked with 14 Queensland outdoor workplaces from farming, construction, public service and local government industries to develop personalized sun protection action plans.

After adopting these individualized plans, the number of workers who reported using sun protection increased significantly.

Professor Michael Kimlin and Associate Professor Monika Janda, from QUT's AusSun Research Lab, led the intervention program and the results have been published in the Journal of Occupational and Environmental Medicine titled "Changes in Outdoor Workers' Sun-Related Attitudes, Beliefs and Behaviours: A Pre-Post Workplace Intervention."

"The message is simple, outdoor workers who see their workplace, supervisors and bosses supporting sun protection measures will follow their lead," Professor Janda said.

"Providing better programs, which take into account the specific workplace tasks and culture can make a difference."

QUT health promotion specialist Dr Marguerite Sendall, who was involved at the grassroots level in implementing the workplace interventions, said the study worked closely with workplaces to develop and implement a tailored sun safety plan, encouraging sun awareness and supporting sun protection practices at work.

"The program was about working together in partnership with workplaces, taking into account their individual circumstances and environment, and developing realistic and sustainable strategies," Dr Sendall said.

"It was this partnership and customized strategies that made this study a success and led to significant improvements in the way workplaces and employees approached sun safety."

Dr Sendall said after the 12 months intervention, the results revealed when a workplace was sun safe there was a significant improvement in the attitudes and behaviours of outdoor workers when it came to sun protection.

"For example, the proportion of workers who checked their skin for early signs of skin cancer increased after the intervention program, with 80 per cent reporting they had conducted a skin check in the previous 12 months," Dr Sendall said.

"Ten per cent more workers also had their skin checked by a doctor.

"The study found after the intervention, 20 per cent more workers said they usually or 

always seek natural shade, 25 per cent more workers wore broad-brimmed hats, 19 per cent more wore long-sleeved collared shirts and 16 per cent wore long trousers," she said.

Dr Sendall said there was also a shift in outdoor worker attitudes.

"The proportion of workers who agreed their workplace enforced sun protection and agreed their supervisors protected themselves increased by 10 per cent to 76 per cent of all workers," she said.

One of the workplaces to take part in the study was Goondiwindi Regional Council and workplace champion Andrew Singh said the tailored intervention had produced tangible results.

"At our council, after introducing the intervention, the road construction crew adopted a number of sun safe initiatives," Mr Singh said.

"For example, the council provided portable shade structures to be used during breaks, vehicle windows were tinted and our staff swapped baseball-style caps for broad-brimmed hats.

"Overall, what we found was workers were keen to follow these sun safe measures as they saw their initiatives were welcomed and keenly supported by the mayor, councillors and management."

Dr Sendall said the study highlighted the importance of a consistent sun safe workplace culture.

"Despite ongoing public health campaigns, outdoor workers remain a difficult to reach group but if we can take care in making the sun protection program really relevant to their personal circumstances and work environment, the potential health benefits are significant."

Source: Queensland University of Technology

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Bugs life: The nerve cells that make locusts ‘gang up’

Computer reconstruction of nerve cells in a desert locust that produce the neurochemical serotonin. The colors indicate each cell's response to the social stimuli that cause gregarious behavior. The green cells contain less serotonin after a life-time of crowding with other locusts. The blue cells contain more serotonin after a locust has seen and smelled other locusts for just one hour. The yellow cells increase their serotonin content within an hour of exposing a locust to any of the social stimuli that induce gregarious behavior. Credit: University of Leicester

A team of biologists has identified a set of nerve cells in desert locusts that bring about 'gang-like' gregarious behaviour when they are forced into a crowd.

Dr Swidbert Ott from the University of Leicester's Department of Biology, working with Dr Steve Rogers at the University of Sydney, Australia, has published a study that reveals how newly identified nerve cells in locusts produce the neurochemical serotonin to initiate changes in their behaviour and lifestyle.

The findings demonstrate the importance of individual history for understanding how brain chemicals control behaviour, which may apply more broadly to humans also.

Locusts are normally shy, solitary animals that actively avoid the company of other locusts. But when they are forced into contact with other locusts, they undergo a radical change in behaviour -- they enter a 'bolder' gregarious state where they are attracted to the company of other locusts. This is the critical first step towards the formation of the notorious locust swarms.

Dr Ott said: "Locusts only have a small number of nerve cells that can synthesise serotonin. Now we have found that of these, a very select few respond specifically when a locust is first forced to be with other locusts. Within an hour, they produce more serotonin.

"It is these few cells that we think are responsible for the transformation of a loner into a gang member. In the long run, however, many of the other serotonin-cells also change, albeit towards making less serotonin."

When a locust is first forced into contact with other locusts, a specific set of nerve cells that produce the neurochemical serotonin is responsible for reconfiguring its behaviour so that the previously solitary locust becomes a member of the gang, which is known as 'gregarious' behaviour.

An entirely different set of its serotonin-producing nerve cells is then affected by life in the group in the long run.

Dr Ott added: "The key to our success was to look in locusts that have just become gregarious and that had never met another locust until an hour earlier. If we had looked only in solitary locusts and in locusts that had a life-long history of living in crowds, we would have missed the nerve cells that are the key players in the transformation.

"There is an important lesson here for understanding the mechanisms that drive changes in social behaviour in general, both in locusts and in humans. We have shown how important it is to look at what happens when a new social behaviour is first set up, not just at the long-term outcome.

"Research in insects can give us deep insights into how brains work in general, including our own."

Studies have previously shown that the change from solitary to gregarious behaviour is caused by serotonin.

The new study, which was funded by the Leverhulme Trust, the Biotechnology and Biological Sciences Research Council (BBSRC) and the Royal Society, has identified the individual serotonin-producing nerve cells that are responsible for the switch from solitary to gregarious behaviour.

The scientists used a fluorescent stain that reveals the serotonin-producing nerve cells under the microscope. This allowed them to measure the amount of serotonin in individual nerve cells -- the brighter a nerve cell lights up, the more serotonin it contains. The newly identified cells were much brighter in locusts that had just been forcedly crowded with other locusts. Moreover, the same cells were also brighter in locusts that had their hind legs tickled by the researchers for an hour -- which is sufficient to make the locusts behave gregariously.

Serotonin has important roles in the brains of all animals that include the regulation of moods and social interactions.

In humans, there are strong links between changes in serotonin and mental disorders such as depression and anxiety.

Source: University of Leicester

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Genes tell story of birdsong and human speech

The activity of genes related to singing shows a unique pattern in the brain of an Australian Budgerigar.
Credit: Duke University

His office is filled with all sorts of bird books, but Duke neuroscientist Erich Jarvis didn't become an expert on the avian family tree because of any particular interest in our feathered friends. Rather, it was his fascination with how the human brain understands and reproduces speech that brought him to the birds.

"We've known for many years that the singing behavior of birds is similar to speech in humans -- not identical, but similar -- and that the brain circuitry is similar, too," said Jarvis, an associate professor of neurobiology at the Duke University Medical School and an investigator at the Howard Hughes Medical Institute. "But we didn't know whether or not those features were the same because the genes were also the same."

Now scientists do know, and the answer is yes -- birds and humans use essentially the same genes to speak.

After a massive international effort to sequence and compare the entire genomes of 48 species of birds representing every major order of the bird family tree, Jarvis and his colleagues found that vocal learning evolved twice or maybe three times among songbirds, parrots and hummingbirds.

Even more striking is that the set of genes involved in each of those song innovations is remarkably similar to the genes involved in human speaking ability.

The findings are part of a package of eight scientific papers in a Dec. 12 special issue of Science and 21 additional papers appearing nearly simultaneously in Genome Biology, GigaScience and other journals. Jarvis' name appears on 20 papers and he is a corresponding author for 8 of them.

Jarvis co-led the Avian Phylogenomics Consortium with Guojie Zhang of the National Genebank at BGI in China and the University of Copenhagen and M. Thomas P. Gilbert of the Natural History Museum of Denmark. His Duke lab contributed to preparing samples, sequencing and annotating the genomes, performing the analyses and coordinating the overall project.

The Jarvis lab in the Bryan Research Building prepared DNA of many of the species, pulling it from little chunks of frozen, pink bird flesh collected over the past 30 years by museums and other institutions around the world. To ensure the DNA being sequenced really belonged to the Golden-collared manakin and not an undergraduate lab assistant, the lab has been kept spotlessly clean and many of its tools are used only once, to avoid the possibility of subsequent contamination.

"We change gloves a lot," said Carole Parent, the lab research analyst who set up a DNA isolation pipeline for the next stage of the project to sequence still more birds and supervised sample prep with a team of Duke undergrads and a student from East Chapel Hill High School.

All of this meticulous and somewhat tedious work has given Jarvis and hundreds of colleagues around the world a crack at an unprecedented amount of genomic data generated by BGI in China. The whole-genome comparison of the 48 bird species required new algorithms written at the University of Illinois and University of Texas that ran for 400 years of CPU time on three supercomputers in the U.S.

Of the 29 papers covering everything from penguin evolution to color vision, eight are devoted to bird song.

One of the Dec. 12 papers in Science found there is a consistent set of just over 50 genes that show higher or lower activity in the brains of vocal learning birds and humans. These changes were not found in the brains of birds that do not have vocal learning and of non-human primates that do not speak, according to this Duke team, which was led by Jarvis; Andreas Pfenning, a graduate of the Ph.D. program in computational biology and bioinformatics (CBB); and Alexander Hartemink, professor of computer science, statistical science and biology.

"This means that vocal learning birds and humans are more similar to each other for these genes in song and speech brain areas than other birds and primates are to them," Jarvis said.

These genes are involved in forming new connections between neurons of the motor cortex and neurons that control the muscles that produce sound.

A companion study by another CBB doctorate, Rui Wang, looked at the specialized activity of a pair of genes involved in the regions of the brain that control song and speech. This study, appearing in the Journal of Comparative Neurology, found that these genes are down- and up-regulated in one brain region of song-learning birds during the juvenile period of their vocal learning , changes that last into adulthood. This study, and that of Pfenning, hypothesize that changes in these genes could be critical for the evolution of song in birds and speech in humans.

"You can find those same genes in the genomes of all species, but they're active at much higher or lower levels in the specialized song or speech brain regions of vocal learning birds and humans," Jarvis said. "What this suggests to me is that when vocal learning evolves, there may be a limited way in which the brain circuits can evolve."

Another paper in Science from Duke, led by post-doc Osceola Whitney, Pfenning, Hartemink and Anne West, an associate professor of neurobiology, looked at gene activation in different areas of the brain during singing. This team found activation of 10 percent of the expressed genome during singing, with diverse activation patterns in different song-learning regions of the brain. The diverse gene patterns are best explained by epigenetic differences in the genomes of the different brain regions, meaning that individual cells in different brain regions can regulate genes at a moment's notice when the birds sing.

Among the three main groups of vocal learning birds, parrots are clearly different in their ability to mimic human speech. Mukta Chakraborty, a postdoc in the Jarvis lab, led a project that used the activity of some of the specialized genes to discover that the parrot's speech center is organized somewhat differently. It has what the researchers call a "song-system-within-a-song-system" in which the area of the brain with different gene activity for producing song has an outer ring of still more differences in gene expression.

Parrots are very social animals, Chakraborty said, and having the ability to quickly pick up "dialects" of parrot speech may account for their super-charged speech center. The "shell" or outer regions were found to be proportionally larger in the parrot species, which are believed to have the highest vocal, cognitive and social abilities. These species include Amazon parrots, the African Grey and the Blue and Gold Macaw.

Jarvis was also part of a team with Claudio Mello and his Ph.D. student Morgan Wirthlin at Oregon Health & Science University that found ten more genes that are unique to song-control regions of songbirds. This paper appears in BMC Genomics.

A paper in Science led by Zhang, Gilbert and Jarvis found the genomes of vocal learners are more rapidly evolving and have more chromosomal rearrangements compared to other bird species. This genomic comparison also found similar changes occurred independently in in the song-learning area of different birds' brains.

Jarvis said knowing more of this history of how speech evolved in birds makes vocal learning birds even more valuable model organisms for helping to answer the questions he and other researchers are addressing about human speech.

"Speech is difficult to study in human brains," he said. "Whales and elephants learn speech and songs, but they're too big to house in the lab. Now that we have a deeper understanding of how similar birdsong brain regions are to human speech regions at the genetic level, I think they'll be a better model than ever."

Jarvis' general exploration of the bird brain over his 16 years at Duke has also led to several unexpected discoveries unrelated to song.

In 2005, he and colleagues found a center of the brain in migratory birds that apparently enables sensing of magnetic fields through "night vision." That year he also led a revision of the understanding of bird brain organization and vertebrate brain evolution. Last year, he led a re-drawing of the geography of the bird brain based on analysis of 52 genes that are active in 23 areas of the brains of eight species of birds. This new map shows neuron groupings in the birds' brains to be organized in columns like the brains of humans and other mammals.

He also branched out a bit and learned about the brain structures that enable mice to "sing" in ultrasonic ranges beyond human hearing.

Jarvis said this first wave of findings from the Avian Phylogenomics Consortium is just the beginning of an exciting new era of genomic analysis. The international group is already sequencing more birds at the whole-genome level.

"This is an exciting moment," said Jarvis, who is also a member of the Duke Institute for Brain Sciences. "Lots of fundamental questions now can be resolved with more genomic data from a broader sampling. I got into this project because of my interest in birds as a model for vocal learning and speech production in humans, and it has opened up some amazing new vistas on brain evolution."

Source: Duke University

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Climate change projected to drive species northward

Coho salmon are among the species anticipated to shift northward with climate change. Credit: NOAA Fisheries

Anticipated changes in climate will push West Coast marine species from sharks to salmon northward an average of 30 kilometers per decade, shaking up fish communities and shifting fishing grounds, according to a new study published in Progress in Oceanography.

The study suggests that shifting species will likely move into the habitats of other marine life to the north, especially in the Gulf of Alaska and Bering Sea. Some will simultaneously disappear from areas at the southern end of their ranges, especially off Oregon and California.

"As the climate warms, the species will follow the conditions they're adapted to," said Richard Brodeur, a NOAA Fisheries senior scientist at the Northwest Fisheries Science Center's Newport Research Station and coauthor of the study. "We're going to see more interactions between species and there will be winners and losers that we cannot foresee."

The study, led by William Cheung of the University of British Columbia, estimated changes in the distribution of 28 near-surface fish species commonly collected by research surveys in the northeast Pacific Ocean. The researchers used established global climate models to project how the distribution of the fish would shift by 2050 as greenhouse gases warm the atmosphere and, in turn, the ocean surface.

Brodeur cautioned that like any models, climate models carry uncertainty. While they provide a glimpse of the most likely changes in global climate, they may be less accurate when estimating more fine-scale, local changes.

"Nothing is certain," he said, "but we think we have a picture of the most likely changes."
Some species shifts are already being documented as West Coast waters are warming: predatory Humboldt squid from Central and South America have invaded the West Coast of North America in recent years, albacore have shifted to more northerly waters and eulachon have disappeared from warming waters at the southern end of their range.

"Thinking more broadly, this re-shuffling of marine species across the whole biological community may lead to declines in the beneficial functions of marine and coastal ecosystems," said Tom Okey, a Pew Fellow in Marine Conservation at the University of Victoria and a coauthor of the study. "These declines may occur much more rapidly and in more surprising ways than our expected changes in species alone."

The study anticipates warm-water species such as thresher sharks and chub mackerel becoming more prominent in the Gulf of Alaska and off British Columbia. Some predators such as sea lions and seabirds, which rear their young in fixed rookeries or colonies, may find the fish they usually prey on moving beyond predators' usual foraging ranges.

"If their prey moves farther north, they either have to travel farther and expend more energy to get to them, or find something else to eat," Brodeur said. "It's the same thing for fishermen. If it gets warmer, the fish they depend on are going to move up north and that means more travel time and more fuel will be needed to follow them, or else they may need to switch to different target species. It may not happen right away but we are likely to see that kind of a trend."

El Nino years, when tropical influences temporarily warm the eastern Pacific, offer a preview of what to expect as the climate warms.

Shifts in marine communities may be most pronounced in high-latitude regions such as the Gulf of Alaska and Bering Sea, which the study identifies as "hotspots" of change. Cold-water species such as salmon and capelin have narrower temperature preferences than warmer water species, making them more sensitive to ocean warming and likely to respond more quickly.

An intrusion of warm-water species into cooler areas could lead to significant changes in marine communities and ecosystems. The diversity of northern fish communities, now often dominated by a few very prolific species such as walleye pollock, may increase as southern species enter the region, leading to new food web and species interactions.

Source: NOAA Fisheries West Coast Region

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New species of beetle discovered in the world's deepest cave

This is a drawing of Duvalius abyssimus. Credit: Sinc - José Antonio Peñas

The unusual habitat of the Krubera cave in the Western Caucasus remains a mystery. Researchers from two Spanish universities have discovered a new species of beetle in the depths of this cave.

Cave beetles are one of the most iconic species found in subterranean habitats. They were historically the first living organisms described by science that are adapted to the conditions of hypogean or subterranean life.

Now, a Portuguese scientist and a Spaniard have discovered a new species of beetle in the deepest cave known to man; a cave 2,140 metres deep. It is the Krubera cave, situated in the Arabika massif in the Western Caucasus.

Ana Sofía Reboleira, researcher from the Universities of Aveiro and La Laguna, and Vicente M. Ortuño, from the University of Alcalá, have published their discovery in the scientific journal 'Zootaxa'.

"The new species of cave beetle is called Duvalius abyssimus. We only have two specimens, a male and a female. Although they were captured in the world's deepest cave, they were not found at the deepest point," Ortuño, who has dedicated the last 10 years to studying subterranean fauna, said.

The Duvalius genus is a successful colonizer of Earth's depths. The majority of species have a hypogean lifestyle and live in caves or the superficial underground compartment.

"The new species' characteristics indicate that it is moderately adapted to life underground. Proof of this is that they still have eyes, which are absent in the highly specialised cave species," added the expert.

The Arabika massif region in Abkhazia, where this cave is found, is biogeographically a very interesting area. Altitudes fluctuate between 1,900 and 2,500 metres and the cave is composed of lower and upper Jurassic-Cretaceous limestone.

Its large area has provided endless subterranean refuges for fauna. In fact, various genera of endemic cave beetles live in the Western Caucasus. "Its location is strategic, since there are fauna of European, Asian and also endemic origin in the zone," the scientist underlined.

The entrance to the cave is 2,240 metres above sea level and 15 kilometres from the Black Sea. Below numerous vertically-cutting sections, it reaches a depth of 1,400 metres. From this level, it splits into branches and in order to reach the greatest known depth, it is necessary to pass various flooded underground chambers using diving techniques.

"The discovery of the new beetle provides important data on species that co-exist in these almost unknown ecosystems, even more so when they are found in a geographical area that is very difficult to access, such is the case with this cave," Ortuño concluded.

Source:  FECYT - Spanish Foundation for Science and Technology

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Ancient creature discovered in the depths of the Arctic Ocean

This image shows the new species of bivalve mollusk was recently described and named Wallerconcha sarae. Credit: Paul Valentich-Scott; CC-BY 4.0

In the depths of the Arctic Ocean, buried deep in the sediment, an ancient creature waited for over a million years to be discovered. Paul Valentich-Scott, from the Santa Barbara Museum of Natural History (California), and three scientists from the United States Geological Survey (USGS, Menlo Park, California), Charles L. Powell, Brian D. Edwards, and Thomas D. Lorenson were up to the challenge. Each with different expertise, they were able to collect, analyze, and identify a new genus and new species of bivalve mollusk.

The path to discovery is seldom simple or easy. This discovery is no exception. Brian Edwards was the chief scientist on a joint US-Canadian ice breaker expedition aboard the US Coast Guard Cutter Healy in the summer of 2010. The primary purpose of the expedition was to map the Arctic seafloor and the sediments beneath. Dr. Edwards took deep sediment core samples to further understand the geology of the region including the unusual seafloor mound where these samples were collected. In several of these cores he uncovered bivalve seashells buried nearly 15 feet (4.5 m) below the seafloor surface.

Upon returning to his USGS laboratory in Menlo Park, California, Brian worked with Tom Lorenson on sampling the cores and extracting the shells. The recovered shells were then taken to USGS paleontologist Chuck Powell, for identification. While Chuck was able to ascertain the higher level classification of the clam shells (Family Thyasiridae), he was unable to determine the genus or species. Chuck contacted Paul Valentich-Scott, a clam specialist from the Santa Barbara Museum of Natural History in California.

When examining these ancient shell specimens, Paul was fairly certain that they were new to science. The hunt to validate the potential new species was on. Paul contacted a number of thyasirid bivalve specialists around the world and all gave it a thumbs up as a new species. Further, several scientists felt it also might be a new genus (the level above species).

'It is always exciting when you are the first person to be looking at a new creature' declared Valentich-Scott. 'While I have been fortunate to discover and describe many new species in my career, it is always exhilarating at the outset.'

Then the painstaking work began. Paul contacted museums around the globe and requested to borrow specimens that were potentially related to the new species. While he found many species that shared some characteristics, none matched the new Arctic specimens.

The four scientists have been writing up their findings for the past two years and now the work has been published in the international science journal ZooKeys.

The new genus and species is named after two individuals. The genus is named in honor of Dr. Thomas R. Waller a prominent paleontologist at the Smithsonian Institution. The suffix "concha" meaning shell, is combined to create the name Wallerconcha. The new species is named after Sara Powell the daughter of co-author Chuck Powell. Chuck was quick to mention "I want to name new species after all of my children."

While many of the specimens collected were definitely fossils, the scientists can't discount the new animal might still be alive today. One of the team members, Tom Lorenson, summarized it this way 'The likely collection of living specimens of this species awaits expeditions to come.' Who knows what other new creatures might be found in those expeditions?

Soure: Pensoft Publishers

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Early warning signals of abrupt climate change

Drought (stock image). Credit: © carloscastilla / Fotolia

A new study by researchers at the University of Exeter has found early warning signals of a reorganisation of the Atlantic ocean's circulation which could have a profound impact on the global climate system.

The research, published today in the journal Nature Communications, used a simulation from a highly complex model to analyse the Atlantic Meridional Overturning Circulation (AMOC), an important component of the Earth's climate system.

It showed that early warning signals are present up to 250 years before it collapses, suggesting that scientists could monitor the real world overturning circulation for the same signals.

The AMOC is like a conveyor belt in the ocean, driven by the salinity and temperature of the water. The system transports heat energy from the tropics and Southern Hemisphere to the North Atlantic, where it is transferred to the atmosphere.

Experiments suggest that if the AMOC is 'switched off' by extra freshwater entering the North Atlantic, surface air temperature in the North Atlantic region would cool by around 1-3°C, with enhanced cooling of up to 8°C in the worst affected regions.

The collapse would also encourage drought in the Sahel -- the area just south of the Sahara desert -- and dynamic changes in sea level of up to 80cm along the coasts of Europe and North America.

"We found that natural fluctuations in the circulation were getting longer-lived as the collapse was approached, a phenomenon known as critical slowing down," said lead author Chris Boulton.

"We don't know how close we are to a collapse of the circulation, but a real world early warning could help us prevent it, or at least prepare for the consequences" adds co-author Professor Tim Lenton.

The study is the most realistic simulation of the climate system in which this type of early warning signal has been tested.

"The best early warning signals in the model world are in places where major efforts are going into monitoring the circulation in the real world -- so these efforts could have unexpected added value' adds Professor Lenton.

Source: University of Exeter

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Maintaining a reliable value of the cost of climate change

Car exhaust. Credit: © Wrangler / Fotolia

The term Social Cost of Carbon is a figure that puts a dollar value on the climate damages per ton of CO2 released, and is used by, among others, policymakers to help determine the costs and benefits of climate policies. In the latest issue of the journal Science, a group of economists and lawyers urge several improvements to the government's figure that would impose a regular, transparent and peer-reviewed process to ensure it is reliable and well-supported by the latest facts.

"By providing an estimate of the damages from an extra ton of CO2 emissions, the Social Cost of Carbon tells us how much money we should devote to mitigating emissions. It separates the efficient policies from the wasteful ones, and for this reason is an incredibly useful tool in devising climate policy," said Prof. Michael Greenstone, one of the authors of the analysis and the director of the Energy Policy Institute at the University of Chicago. "Having said that, every day we are learning more about the science behind climate change and the economic impacts it imposes. It's vital that policy keeps up as our knowledge evolves."

The researchers suggest that the value be updated routinely, specifically they recommend every five years to balance the need for incorporating the latest research with a thorough review process. Part of that process should entail a review by the National Academy of Science's National Research Council, they say, to allow outside experts to be part of the process and suggest changes. They also argue that a single Social Cost of Carbon estimate should be maintained and shared by all government agencies.

"Greenhouse gas emissions cause the same damage, regardless of whether they are emitted through car tailpipes or factory smokestacks, and no matter where in the world they come from," Greenstone said. "For this reason, one, consistently used and rigorously maintained estimate of climate damages is imperative to ensure our climate policies are providing the maximum benefits for the least costs."

William Pizer, the lead author of the study and a professor at Duke University, further emphasized this need.

"To ensure that value exists, it's important that we draw on the expertise of all government agencies, as well as independent experts in the field," Pizer said. "This level of high-quality collaboration and peer review would decrease the likelihood of political factors interfering with the process, and ensure we have the most robust Social Cost of Carbon."

The authors give an example of why such a consistent, collaborative and well-supported value is important. When the Social Cost of Carbon value used today, which was developed with a vigorous approach, is applied to the EPA's recent Clean Power Plan that limits emissions from existing power plants, the benefits of the rule vastly outweigh the damages. However, when applying a past value used by a single agency, the plan's benefits do not exceed the costs.

Additionally, Greenstone noted that the figure is not just a tool for policymakers. The courts, businesses and others use this figure to make important decisions on the impacts associated with climate change.

"The U.S. Social Cost of Carbon is becoming a focal estimate of the likely climate damages globally," Greenstone said. "It's critical that that we get this number right, because it will influence policy around the world."

Greenstone and some of his colleagues have initiated a larger project to determine an even more rigorously maintained cost of climate change at a global scale. "Our hope is that this ongoing research project will inform the periodic revisions of the Social Cost of Carbon that we advocate for in this Science article."

Source: University of Chicago

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How pace of climate change will challenge ectotherms

Turtles sunning themselves (stock image). Turtles are ectotherms, one of many that will be threatened by climate change, researchers say.
Credit: © xoanon / Fotolia

Animals that regulate their body temperature through the external environment may be resilient to some climate change but not keep pace with rapid change, leading to potentially disastrous outcomes for biodiversity.

A study by the University of Sydney and University of Queensland showed many animals can modify the function of their cells and organs to compensate for changes in the climate and have done so in the past, but the researchers warn that the current rate of climate change will outpace animals' capacity for compensation (or acclimation).

The research has just been published in Nature Climate Change (Letters), written by Professor Frank Seebacher School of Biological Sciences and Professor Craig Franklin and Associate Professor Craig White from the University of Queensland.

Adapting to climate change will not just require animals to cope with higher temperatures. The predicted increase to fluctuations in temperature as well as to overall temperature would require animals to function across a broader range of conditions. This is particularly important for ectotherms, animals that rely on external sources of heat to control body temperature, and are therefore more influenced by environmental temperatures.

The research showed that many groups of ectotherms, which make up more than 90 percent of all animals, are able to change their physiological function to cope with an altered environment, but the rapid pace and fluctuations of human-induced climate change present serious challenges.

The researchers studied 40 years of published data to assess how biological functions change in response to a sudden fluctuations in environmental temperatures. They found that the physiological rates of ectothermic animals, such as heart rate, metabolism and locomotion, had already increased over the past 20 years with increasing average temperatures.

"It is important that animals maintain the right balance between the large number of physiological functions despite environmental fluctuations. An increase in temperature that leads to changed reaction rates can upset that balance and cause the decline of individuals and species," said Professor Seebacher. "For example, movement requires energy and oxygen to be delivered to muscles. However, if metabolism or the cardiovascular system can't cope with increased temperatures, animals can no longer move to forage, migrate or interact with each other.

"The overall trend in the last 20 years has been to increased physiological rates, and we predict that this would continue to increase with increasing temperature. "Even if animals are able to maintain the balance of their physiological functions in a warmer climate, increased metabolism leads to increases in the food resources needed and could upset the balance in ecosystems, particularly if predator and prey populations respond very differently to the environmental temperature change."

Source: University of Sydney

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Abundance of microplastics in the world's deep seas

Richard Thompson.
Credit: Image courtesy of University of Plymouth

The deep sea is becoming a collecting ground for plastic waste, according to research led by scientists from Plymouth University and Natural History Museum.

The new study, published today in Royal Society Open Science, reveals around four billion microscopic plastic fibres could be littering each square kilometre of deep sea sediment around the world.

Marine plastic debris is a global problem, affecting wildlife, tourism and shipping. Yet monitoring over the past decades has not seen its concentration increase at the sea surface or along shorelines, despite experts knowing that more is being created.

However, the current study indicates this may be because microplastics have sunk to the ocean floor, with the number of fibres recorded in the deep seas up to four times greater than in shallow and coastal waters.

"The puzzle for marine scientists has been to establish where plastic debris is going. Part of the answer is that much of this waste is breaking down into fibres invisible to the naked eye and sinking to the sea floor," said Dr Lucy Woodall, zoologist at the Natural History Museum. "It is alarming to find such high levels of contamination, especially when the full effect of these plastics on the delicate balance of deep sea ecosystems is unknown."

The study, which also involved the University of Barcelona, the University of Oxford and the Scottish Association for Marine Science, focussed on deep-sea sediment and coral samples collected by Dr Woodall and other scientists from 16 sites in the Mediterranean Sea, Atlantic and Indian Oceans.

Analysis of the non-natural particles at Plymouth University confirmed microplastics were abundant in all the samples (ranging from 1.4-40 pieces per 50ml of sediment), were commonly around 2-3mm in length and were mostly blue, black, green or red in colour.

Rayon -- a humanmade non-plastic polymer used in personal hygiene products and clothing -- contributed to 56.9% of the total fibres seen, with polyester, polyamides, acetate and acrylic among the others recorded.

Professor Richard Thompson, Professor of Marine Biology at Plymouth University, coordinated the study and led the identification process. He said: "The deep sea habitat extends to more than 300 million km² globally, so the discovery of previously under-reported microplastics suggests there may be even greater accumulation than was previously suspected. A range of shallow water organisms are known to ingest microplastics, and the extent of their harmful effects will likely be influenced by their relative abundance. The discovery of substantial quantities in deep-sea sediments is of considerable relevance to our understanding of the potential of these particles to cause harm in the marine environment."

Source:  University of Plymouth

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March of the penguin genomes

Adélie penguins.
Credit: David Lambert

Two penguin genomes have been sequenced and analyzed for the first time in the open access, open data journal GigaScience. Timely for the holiday season, the study reveals insights into how these birds have been able to adapt to the cold and hostile Antarctic environment.

Antarctic penguins are subject to extremely low temperatures, high winds, and profound changes in daylight. They have developed complicated biological systems to regulate temperature and store energy for long-term fasting. Most studies have focused on the physiological and behavioral aspects of their biology, but an international team of researchers has now analyzed the DNA of two Antarctic penguins (Adélie and emperor) relative to other bird species, revealing the genetic basis of their adaptations and their evolutionary history in response to climate change.

Using the historical genetic record within the DNA across bird species, the researchers estimate that penguins first appeared around 60 million years ago. The study shows that the Adélie penguin population increased rapidly about 150,000 years ago when the climate became warmer, but later declined by 40% about 60,000 years ago during a cold and dry glacial period. In contrast, the emperor penguin population remained stable, suggesting that they were better adapted to glacial conditions, for example, by being able to protect their eggs from freezing temperatures and incubate them on their feet.

Cai Li, Team Lead at BGI-Shenzhen, China, said: "These different patterns in historical population change also suggest that future climate change may have impacts on the two penguin species. For example, the fact that emperor penguins didn't experience the same population boom as Adélie penguins in warm climates means that they could suffer more from global warming, and this needs to be considered in conservation efforts in Antarctica."
Both penguins were found to have expanded genes related to beta-keratins -- the proteins which make up 90% of feathers. They also had at least 13 genes responsible for a single type of beta-keratin, which is the highest number compared to all other known bird genomes. This would explain their importance in ensuring that penguin feathers are short, stiff and densely packed to minimize heat loss, remain waterproof and aid underwater flight. Likely to be responsible for penguins' thick skin, the team also identified a gene called DSG1, which is known to be involved in a human dermatological disease characterized by thick skin on the palms and soles.

Fat storage is critical for penguins to withstand the cold and survive long fasting periods -- up to four months in emperor penguins. The two penguins were found to have exploited different adaptations for lipid metabolism in the course of their evolution, which may also provide insight into their contrasting abilities for coping with climate change. The researchers found eight genes involved in lipid metabolism in the Adélie penguin, and three in the emperor penguin.

During their evolutionary history, the wings (or forelimbs) of penguins changed profoundly for wing-propelled diving in the water. The team identified 17 forelimb-related genes in the penguin genomes that had unique changes. One of the genes in particular, EVC2, showed a larger number of genetic changes compared to other birds. Mutations of EVC2 in humans cause Ellis-van Creveld syndrome, characterized by short-limb dwarfism and short ribs.
Guojie Zhang, Assistant Professor at the University of Copenhagen and Associate Director at China National GeneBank, BGI-Shenzhen, China, said: "Penguins show distinct evolution relative to other bird species. They can't fly, have specialized skin and feathers, degenerated wings, and live in a cold environment in which most other birds could not survive. 

Comparative genomics is a powerful tool for providing answers on the molecular basis of these evolutionary changes and how organisms deal with the conditions they are exposed to. Our study has revealed several of these secrets for the two penguins."

David Lambert, Professor of Evolutionary Biology at Griffith University, Australia, said: "Although Adélie and Emperor penguins both breed on the Antarctic continent, they do so in very different ways. By sequencing the genomes of two penguin species we have been able to compare many of the genes that are responsible for these different abilities to do the same thing -- namely to survive and breed in Antarctica. This study is particularly important because it now provides us with the opportunity to conduct large scale evolutionary studies of both species."

These papers are part of a series of reports from the Avian Phylogenomics Project that are being published in concert in multiple journals. The authors of several Science papers will unveil new genomic results related to the avian tree of life, and a number of papers are also published in BMC Genomics, BMC Evolutionary Biology and Genome Biology.

Avian Genome Collection on BioMed Central: http://www.biomedcentral.com/series/avian

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